anndata>=0.6.22rc1
matplotlib==3.0.*
pandas>=0.21
scipy>=1.3
seaborn
h5py
tables
tqdm
scikit-learn!=0.21.0,!=0.21.1,>=0.19.1
statsmodels>=0.10.0rc2
patsy
networkx
natsort
joblib
numba>=0.41.0
umap-learn>=0.3.0

[:python_version < "3.8"]
importlib_metadata>=0.7

[bbknn]
bbknn

[doc]
sphinx
sphinx_rtd_theme
sphinx_autodoc_typehints
scanpydoc

[leiden]
python-igraph
leidenalg

[louvain]
python-igraph
louvain>=0.6

[test]
pytest>=4.4
dask[array]
zappy
zarr
